Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7132
Gene Symbol: TNFRSF1A
TNFRSF1A
0.010 AlteredExpression group LHGDN [A study on early activation of T lymphocytes and soluble tumor necrosis factor receptor in patients with myelodysplastic syndrome]. 14728878 2003
Entrez Id: 7133
Gene Symbol: TNFRSF1B
TNFRSF1B
0.010 AlteredExpression group LHGDN [A study on early activation of T lymphocytes and soluble tumor necrosis factor receptor in patients with myelodysplastic syndrome]. 14728878 2003
Entrez Id: 5788
Gene Symbol: PTPRC
PTPRC
0.040 Biomarker group BEFREE Yttrium-90-labeled anti-CD45 antibody followed by a reduced-intensity hematopoietic cell transplantation for patients with relapsed/refractory leukemia or myelodysplasia. 31582553 2019
Entrez Id: 7454
Gene Symbol: WAS
WAS
0.020 GeneticVariation group BEFREE X-linked neuropenia (XLN) is caused by gain-of-function mutations in WASp and associated with acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS). 30393584 2018
Entrez Id: 3717
Gene Symbol: JAK2
JAK2
0.200 Biomarker group BEFREE With the advent of next generation sequencing, recurrent somatic mutations in genes involved in epigenetic regulation (TET2, ASXL1, EZH2, DNMT3A, IDH1/2), RNA splicing (SF3B1, SRSF2, U2AF1, ZRSR2), DNA damage response (TP53), transcriptional regulation (RUNX1, BCOR, ETV6) and signal transduction (CBL, NRAS, JAK2) have been identified in MDS. 26769228 2016
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.200 Biomarker group BEFREE With the advent of next generation sequencing, recurrent somatic mutations in genes involved in epigenetic regulation (TET2, ASXL1, EZH2, DNMT3A, IDH1/2), RNA splicing (SF3B1, SRSF2, U2AF1, ZRSR2), DNA damage response (TP53), transcriptional regulation (RUNX1, BCOR, ETV6) and signal transduction (CBL, NRAS, JAK2) have been identified in MDS. 26769228 2016
Entrez Id: 2120
Gene Symbol: ETV6
ETV6
0.100 Biomarker group BEFREE With the advent of next generation sequencing, recurrent somatic mutations in genes involved in epigenetic regulation (TET2, ASXL1, EZH2, DNMT3A, IDH1/2), RNA splicing (SF3B1, SRSF2, U2AF1, ZRSR2), DNA damage response (TP53), transcriptional regulation (RUNX1, BCOR, ETV6) and signal transduction (CBL, NRAS, JAK2) have been identified in MDS. 26769228 2016
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.500 AlteredExpression group BEFREE With the advent of next generation sequencing, recurrent somatic mutations in genes involved in epigenetic regulation (TET2, ASXL1, EZH2, DNMT3A, IDH1/2), RNA splicing (SF3B1, SRSF2, U2AF1, ZRSR2), DNA damage response (TP53), transcriptional regulation (RUNX1, BCOR, ETV6) and signal transduction (CBL, NRAS, JAK2) have been identified in MDS. 26769228 2016
Entrez Id: 7307
Gene Symbol: U2AF1
U2AF1
0.800 AlteredExpression group BEFREE With the advent of next generation sequencing, recurrent somatic mutations in genes involved in epigenetic regulation (TET2, ASXL1, EZH2, DNMT3A, IDH1/2), RNA splicing (SF3B1, SRSF2, U2AF1, ZRSR2), DNA damage response (TP53), transcriptional regulation (RUNX1, BCOR, ETV6) and signal transduction (CBL, NRAS, JAK2) have been identified in MDS. 26769228 2016
Entrez Id: 4233
Gene Symbol: MET
MET
0.020 Biomarker group BEFREE With specific probes for MET we analysed the DNA of 88 MDS patients (81 de novo and seven secondary cases).In 17 of them the RNA was also studied. 2803976 1989
Entrez Id: 574411
Gene Symbol: MIR451A
MIR451A
0.010 Biomarker group BEFREE With regard to the prognosis, the levels of miR-27a-3p, miR-150-5p, miR-199a-5p, miR-223-3p and miR-451a were reduced in higher-risk MDS. 28485163 2019
Entrez Id: 407008
Gene Symbol: MIR223
MIR223
0.010 Biomarker group BEFREE With regard to the prognosis, the levels of miR-27a-3p, miR-150-5p, miR-199a-5p, miR-223-3p and miR-451a were reduced in higher-risk MDS. 28485163 2019
Entrez Id: 63976
Gene Symbol: PRDM16
PRDM16
0.060 GeneticVariation group LHGDN With fluorescence in situ hybridization analysis by use of BAC/PAC probes, we identified the breakpoint at 1p36.3 in three MDS/AML patients with t(1;3)(p36;q21): within the first intron of the MEL1 gene (one patient) or within a 29-kb region located in the 5' region of MEL1 (two other patients). 12557231 2003
Entrez Id: 63976
Gene Symbol: PRDM16
PRDM16
0.060 GeneticVariation group BEFREE With fluorescence in situ hybridization analysis by use of BAC/PAC probes, we identified the breakpoint at 1p36.3 in three MDS/AML patients with t(1;3)(p36;q21): within the first intron of the MEL1 gene (one patient) or within a 29-kb region located in the 5' region of MEL1 (two other patients). 12557231 2003
Entrez Id: 947
Gene Symbol: CD34
CD34
0.100 Biomarker group BEFREE Whole-genome sequencing was performed in CD34(+) hematopoietic stem/progenitor cells (HSPCs) from eight cases of refractory anemia with excess blasts (RAEB), the high-risk subtype of MDS. 24850867 2014
Entrez Id: 6091
Gene Symbol: ROBO1
ROBO1
0.010 GeneticVariation group BEFREE Whole-exome and targeted sequencing identify ROBO1 and ROBO2 mutations as progression-related drivers in myelodysplastic syndromes. 26608094 2015
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.500 GeneticVariation group BEFREE Whole-arm translocation of der(5;17)(p10;q10) with concurrent TP53 mutations in acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS): A unique molecular-cytogenetic subgroup. 27134073 2016
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.500 GeneticVariation group BEFREE While we did not observe unique features among MDS-RS, mutations were noticeably absent in a significant number of MDS without RS (37% vs. 14%, P = 0.013), including TP53 mutations (0% vs.16.5%, P = 0.021) if ≥5% CD34 + hematogones were present. 31211490 2020
Entrez Id: 861
Gene Symbol: RUNX1
RUNX1
0.500 GeneticVariation group BEFREE While the majority of mutations were constitutional, a RUNX1 mutation present in the peripheral blood at a 51% variant allele fraction was confirmed to be somatically acquired in one myelodysplastic syndrome patient. 27418648 2016
Entrez Id: 3486
Gene Symbol: IGFBP3
IGFBP3
0.010 Biomarker group LHGDN While the data are complex, they are consistent with a modulatory effect of IGFBP-3 on hemopoiesis in MDS. 15703779 2005
Entrez Id: 8794
Gene Symbol: TNFRSF10C
TNFRSF10C
0.010 AlteredExpression group BEFREE While normal marrow showed negligible expression of TRAIL and receptors (except TRAIL-R3), TRAIL and all receptors were constitutively expressed in MDS marrow. 11698291 2001
Entrez Id: 6208
Gene Symbol: RPS14
RPS14
0.200 GeneticVariation group BEFREE While establishing a cell culture model for myelodysplastic syndrome with a deletion in 5q by performing RPS14 knockdown, we found surprising data that may be of importance for any CD34+ cell culture experiments. 24192547 2014
Entrez Id: 2146
Gene Symbol: EZH2
EZH2
0.400 GeneticVariation group BEFREE While components and regulators of PRC2 such as ASXL1 and EZH2 are frequently mutated in MDS and AML, little is known about the role of PRC1. 29383137 2017
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.800 GeneticVariation group BEFREE While components and regulators of PRC2 such as ASXL1 and EZH2 are frequently mutated in MDS and AML, little is known about the role of PRC1. 29383137 2017
Entrez Id: 8743
Gene Symbol: TNFSF10
TNFSF10
0.060 AlteredExpression group BEFREE While CD34 stem/progenitor cells do not express TRAIL-receptors and are protected from TRAIL-induced apoptosis, accumulating evidence points to a role for elevated expression/release of TRAIL at the bone marrow level in the pathophysiology of aplastic anemia, Fanconi anemia, and myelodysplastic syndromes. 18043245 2008